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fix(deps): upgrade to sqlalchemy version 2

Browse source 
Bump sqlalchemy to version 2.0.22

There are quite some changes that happened with v2.
We are currently relying on the "auto-commit" feature which was removed.
For the moment we can use a wrapper class to mimic the auto-commit
behavior allowing us to move to v2.

Ultimately, the (db) session management needs some overhaul though.

Signed-off-by: moson <moson@archlinux.org>
This commit is contained in:
moson-mo 2023-06-30 11:05:18 +02:00 • committed by moson
parent 27c51430fb
commit db004d5ebd
No known key found for this signature in database
GPG key ID: 4A4760AB4EE15296
12 changed files with 182 additions and 160 deletions
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19
aurweb/db.py
View file

@ -2,6 +2,17 @@
DRIVERS = {"mysql": "mysql+mysqldb"} DRIVERS = {"mysql": "mysql+mysqldb"}
class Committer:
def __init__(self, session):
self.session = session
def __enter__(self):
pass
def __exit__(self, *args):
self.session.commit()
def make_random_value(table: str, column: str, length: int): def make_random_value(table: str, column: str, length: int):
"""Generate a unique, random value for a string column in a table. """Generate a unique, random value for a string column in a table.
@ -76,9 +87,7 @@ def get_session(engine=None):
if not engine: # pragma: no cover if not engine: # pragma: no cover
engine = get_engine() engine = get_engine()
Session = scoped_session( Session = scoped_session(sessionmaker(autoflush=False, bind=engine))
sessionmaker(autocommit=True, autoflush=False, bind=engine)
)
_sessions[dbname] = Session() _sessions[dbname] = Session()
return _sessions.get(dbname) return _sessions.get(dbname)
@ -158,7 +167,7 @@ def add(model):
def begin(): def begin():
"""Begin an SQLAlchemy SessionTransaction.""" """Begin an SQLAlchemy SessionTransaction."""
return get_session().begin() return Committer(get_session())
def retry_deadlock(func): def retry_deadlock(func):
@ -217,7 +226,7 @@ def get_sqlalchemy_url():
parts = sqlalchemy.__version__.split(".") parts = sqlalchemy.__version__.split(".")
major = int(parts[0]) major = int(parts[0])
minor = int(parts[1]) minor = int(parts[1])
if major == 1 and minor >= 4: # pragma: no cover if (major == 1 and minor >= 4) or (major == 2): # pragma: no cover
constructor = URL.create constructor = URL.create
aur_db_backend = aurweb.config.get("database", "backend") aur_db_backend = aurweb.config.get("database", "backend")

1
aurweb/initdb.py
View file

@ -59,6 +59,7 @@ def run(args):
engine = aurweb.db.get_engine(echo=(args.verbose >= 1)) engine = aurweb.db.get_engine(echo=(args.verbose >= 1))
aurweb.schema.metadata.create_all(engine) aurweb.schema.metadata.create_all(engine)
conn = engine.connect() conn = engine.connect()
with conn.begin():
feed_initial_data(conn) feed_initial_data(conn)
conn.close() conn.close()

2
aurweb/models/declarative.py
View file

@ -1,6 +1,6 @@
import json import json
from sqlalchemy.ext.declarative import declarative_base from sqlalchemy.orm import declarative_base
from aurweb import util from aurweb import util

4
aurweb/packages/search.py
View file

@ -210,7 +210,7 @@ class PackageSearch:
# in terms of performance. We should improve this; there's no # in terms of performance. We should improve this; there's no
# reason it should take _longer_. # reason it should take _longer_.
column = getattr( column = getattr(
case([(models.PackageVote.UsersID == self.user.ID, 1)], else_=0), order case((models.PackageVote.UsersID == self.user.ID, 1), else_=0), order
) )
name = getattr(models.Package.Name, order) name = getattr(models.Package.Name, order)
self.query = self.query.order_by(column(), name()) self.query = self.query.order_by(column(), name())
@ -221,7 +221,7 @@ class PackageSearch:
# in terms of performance. We should improve this; there's no # in terms of performance. We should improve this; there's no
# reason it should take _longer_. # reason it should take _longer_.
column = getattr( column = getattr(
case([(models.PackageNotification.UserID == self.user.ID, 1)], else_=0), case((models.PackageNotification.UserID == self.user.ID, 1), else_=0),
order, order,
) )
name = getattr(models.Package.Name, order) name = getattr(models.Package.Name, order)

2
aurweb/routers/html.py
View file

@ -145,7 +145,7 @@ async def index(request: Request):
.order_by( .order_by(
# Order primarily by the Status column being PENDING_ID, # Order primarily by the Status column being PENDING_ID,
# and secondarily by RequestTS; both in descending order. # and secondarily by RequestTS; both in descending order.
case([(models.PackageRequest.Status == PENDING_ID, 1)], else_=0).desc(), case((models.PackageRequest.Status == PENDING_ID, 1), else_=0).desc(),
models.PackageRequest.RequestTS.desc(), models.PackageRequest.RequestTS.desc(),
) )
.limit(50) .limit(50)

2
aurweb/routers/requests.py
View file

@ -110,7 +110,7 @@ async def requests( # noqa: C901
filtered.order_by( filtered.order_by(
# Order primarily by the Status column being PENDING_ID, # Order primarily by the Status column being PENDING_ID,
# and secondarily by RequestTS; both in descending order. # and secondarily by RequestTS; both in descending order.
case([(PackageRequest.Status == PENDING_ID, 1)], else_=0).desc(), case((PackageRequest.Status == PENDING_ID, 1), else_=0).desc(),
PackageRequest.RequestTS.desc(), PackageRequest.RequestTS.desc(),
) )
.limit(PP) .limit(PP)

12
aurweb/testing/__init__.py
View file

@ -1,3 +1,5 @@
from sqlalchemy import text
import aurweb.db import aurweb.db
from aurweb import models from aurweb import models
@ -56,8 +58,10 @@ def setup_test_db(*args):
models.User.__tablename__, models.User.__tablename__,
] ]
aurweb.db.get_session().execute("SET FOREIGN_KEY_CHECKS = 0") session = aurweb.db.get_session()
session.execute(text("SET FOREIGN_KEY_CHECKS = 0"))
for table in tables: for table in tables:
aurweb.db.get_session().execute(f"DELETE FROM {table}") session.execute(text(f"DELETE FROM {table}"))
aurweb.db.get_session().execute("SET FOREIGN_KEY_CHECKS = 1") session.execute(text("SET FOREIGN_KEY_CHECKS = 1"))
aurweb.db.get_session().expunge_all() session.expunge_all()
session.commit()

257
poetry.lock generated
View file

@ -32,13 +32,13 @@ tz = ["python-dateutil"]
[[package]] [[package]]
name = "annotated-types" name = "annotated-types"
version = "0.5.0" version = "0.6.0"
description = "Reusable constraint types to use with typing.Annotated" description = "Reusable constraint types to use with typing.Annotated"
optional = false optional = false
python-versions = ">=3.7" python-versions = ">=3.8"
files = [ files = [
{file = "annotated_types-0.5.0-py3-none-any.whl", hash = "sha256:58da39888f92c276ad970249761ebea80ba544b77acddaa1a4d6cf78287d45fd"}, {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"},
{file = "annotated_types-0.5.0.tar.gz", hash = "sha256:47cdc3490d9ac1506ce92c7aaa76c579dc3509ff11e098fc867e5130ab7be802"}, {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
] ]
[[package]] [[package]]
@ -140,13 +140,13 @@ typecheck = ["mypy"]
[[package]] [[package]]
name = "bleach" name = "bleach"
version = "6.0.0" version = "6.1.0"
description = "An easy safelist-based HTML-sanitizing tool." description = "An easy safelist-based HTML-sanitizing tool."
optional = false optional = false
python-versions = ">=3.7" python-versions = ">=3.8"
files = [ files = [
{file = "bleach-6.0.0-py3-none-any.whl", hash = "sha256:33c16e3353dbd13028ab4799a0f89a83f113405c766e9c122df8a06f5b85b3f4"}, {file = "bleach-6.1.0-py3-none-any.whl", hash = "sha256:3225f354cfc436b9789c66c4ee030194bee0568fbf9cbdad3bc8b5c26c5f12b6"},
{file = "bleach-6.0.0.tar.gz", hash = "sha256:1a1a85c1595e07d8db14c5f09f09e6433502c51c595970edc090551f0db99414"}, {file = "bleach-6.1.0.tar.gz", hash = "sha256:0a31f1837963c41d46bbf1331b8778e1308ea0791db03cc4e7357b97cf42a8fe"},
] ]
[package.dependencies] [package.dependencies]
@ -154,7 +154,7 @@ six = ">=1.9.0"
webencodings = "*" webencodings = "*"
[package.extras] [package.extras]
css = ["tinycss2 (>=1.1.0,<1.2)"] css = ["tinycss2 (>=1.1.0,<1.3)"]
[[package]] [[package]]
name = "certifi" name = "certifi"
@ -1007,20 +1007,20 @@ testing = ["pytest"]
[[package]] [[package]]
name = "markdown" name = "markdown"
version = "3.4.4" version = "3.5"
description = "Python implementation of John Gruber's Markdown." description = "Python implementation of John Gruber's Markdown."
optional = false optional = false
python-versions = ">=3.7" python-versions = ">=3.8"
files = [ files = [
{file = "Markdown-3.4.4-py3-none-any.whl", hash = "sha256:a4c1b65c0957b4bd9e7d86ddc7b3c9868fb9670660f6f99f6d1bca8954d5a941"}, {file = "Markdown-3.5-py3-none-any.whl", hash = "sha256:4afb124395ce5fc34e6d9886dab977fd9ae987fc6e85689f08278cf0c69d4bf3"},
{file = "Markdown-3.4.4.tar.gz", hash = "sha256:225c6123522495d4119a90b3a3ba31a1e87a70369e03f14799ea9c0d7183a3d6"}, {file = "Markdown-3.5.tar.gz", hash = "sha256:a807eb2e4778d9156c8f07876c6e4d50b5494c5665c4834f67b06459dfd877b3"},
] ]
[package.dependencies] [package.dependencies]
importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""} importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
[package.extras] [package.extras]
docs = ["mdx-gh-links (>=0.2)", "mkdocs (>=1.0)", "mkdocs-nature (>=0.4)"] docs = ["mdx-gh-links (>=0.2)", "mkdocs (>=1.5)", "mkdocs-gen-files", "mkdocs-literate-nav", "mkdocs-nature (>=0.6)", "mkdocs-section-index", "mkdocstrings[python]"]
testing = ["coverage", "pyyaml"] testing = ["coverage", "pyyaml"]
[[package]] [[package]]
@ -1110,71 +1110,61 @@ files = [
[[package]] [[package]]
name = "orjson" name = "orjson"
version = "3.9.7" version = "3.9.9"
description = "Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy" description = "Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy"
optional = false optional = false
python-versions = ">=3.7" python-versions = ">=3.8"
files = [ files = [
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[package.dependencies] [package.dependencies]
greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"} greenlet = {version = "!=0.4.17", markers = "platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\""}
typing-extensions = ">=4.2.0"
[package.extras] [package.extras]
aiomysql = ["aiomysql", "greenlet (!=0.4.17)"] aiomysql = ["aiomysql (>=0.2.0)", "greenlet (!=0.4.17)"]
aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing-extensions (!=3.10.0.1)"] aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing-extensions (!=3.10.0.1)"]
asyncio = ["greenlet (!=0.4.17)"] asyncio = ["greenlet (!=0.4.17)"]
asyncmy = ["asyncmy (>=0.2.3,!=0.2.4)", "greenlet (!=0.4.17)"] asyncmy = ["asyncmy (>=0.2.3,!=0.2.4,!=0.2.6)", "greenlet (!=0.4.17)"]
mariadb-connector = ["mariadb (>=1.0.1,!=1.1.2)"] mariadb-connector = ["mariadb (>=1.0.1,!=1.1.2,!=1.1.5)"]
mssql = ["pyodbc"] mssql = ["pyodbc"]
mssql-pymssql = ["pymssql"] mssql-pymssql = ["pymssql"]
mssql-pyodbc = ["pyodbc"] mssql-pyodbc = ["pyodbc"]
mypy = ["mypy (>=0.910)", "sqlalchemy2-stubs"] mypy = ["mypy (>=0.910)"]
mysql = ["mysqlclient (>=1.4.0)", "mysqlclient (>=1.4.0,<2)"] mysql = ["mysqlclient (>=1.4.0)"]
mysql-connector = ["mysql-connector-python"] mysql-connector = ["mysql-connector-python"]
oracle = ["cx-oracle (>=7)", "cx-oracle (>=7,<8)"] oracle = ["cx-oracle (>=7)"]
oracle-oracledb = ["oracledb (>=1.0.1)"]
postgresql = ["psycopg2 (>=2.7)"] postgresql = ["psycopg2 (>=2.7)"]
postgresql-asyncpg = ["asyncpg", "greenlet (!=0.4.17)"] postgresql-asyncpg = ["asyncpg", "greenlet (!=0.4.17)"]
postgresql-pg8000 = ["pg8000 (>=1.16.6,!=1.29.0)"] postgresql-pg8000 = ["pg8000 (>=1.29.1)"]
postgresql-psycopg = ["psycopg (>=3.0.7)"]
postgresql-psycopg2binary = ["psycopg2-binary"] postgresql-psycopg2binary = ["psycopg2-binary"]
postgresql-psycopg2cffi = ["psycopg2cffi"] postgresql-psycopg2cffi = ["psycopg2cffi"]
pymysql = ["pymysql", "pymysql (<1)"] postgresql-psycopgbinary = ["psycopg[binary] (>=3.0.7)"]
pymysql = ["pymysql"]
sqlcipher = ["sqlcipher3-binary"] sqlcipher = ["sqlcipher3-binary"]
[[package]] [[package]]
@ -1965,4 +1970,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
[metadata] [metadata]
lock-version = "2.0" lock-version = "2.0"
python-versions = ">=3.9,<3.12" python-versions = ">=3.9,<3.12"
content-hash = "87954b20049b8c138bd6c7767247aa017a8c5c64cc857a12ab9d78cf8ac787c7" content-hash = "cfdf70424a62418aa4c3b233cb5ab2486415364bf5ef27198db1f07a579927c7"

2
pyproject.toml
View file

@ -83,7 +83,7 @@ Authlib = "^1.2.1"
Jinja2 = "^3.1.2" Jinja2 = "^3.1.2"
Markdown = "^3.4.4" Markdown = "^3.4.4"
Werkzeug = "^3.0.0" Werkzeug = "^3.0.0"
SQLAlchemy = "^1.4.49" SQLAlchemy = "^2.0.22"
# ASGI # ASGI
uvicorn = "^0.23.0" uvicorn = "^0.23.0"

14
test/conftest.py
View file

@ -43,7 +43,7 @@ from multiprocessing import Lock
import py import py
import pytest import pytest
from sqlalchemy import create_engine from sqlalchemy import create_engine, text
from sqlalchemy.engine import URL from sqlalchemy.engine import URL
from sqlalchemy.engine.base import Engine from sqlalchemy.engine.base import Engine
from sqlalchemy.exc import ProgrammingError from sqlalchemy.exc import ProgrammingError
@ -104,15 +104,16 @@ def _create_database(engine: Engine, dbname: str) -> None:
:param dbname: Database name to create :param dbname: Database name to create
""" """
conn = engine.connect() conn = engine.connect()
with conn.begin():
try: try:
conn.execute(f"CREATE DATABASE {dbname}") conn.execute(text(f"CREATE DATABASE {dbname}"))
except ProgrammingError: # pragma: no cover except ProgrammingError: # pragma: no cover
# The database most likely already existed if we hit # The database most likely already existed if we hit
# a ProgrammingError. Just drop the database and try # a ProgrammingError. Just drop the database and try
# again. If at that point things still fail, any # again. If at that point things still fail, any
# exception will be propogated up to the caller. # exception will be propogated up to the caller.
conn.execute(f"DROP DATABASE {dbname}") conn.execute(text(f"DROP DATABASE {dbname}"))
conn.execute(f"CREATE DATABASE {dbname}") conn.execute(text(f"CREATE DATABASE {dbname}"))
conn.close() conn.close()
initdb.run(AlembicArgs) initdb.run(AlembicArgs)
@ -124,9 +125,10 @@ def _drop_database(engine: Engine, dbname: str) -> None:
:param engine: Engine returned by test_engine() :param engine: Engine returned by test_engine()
:param dbname: Database name to drop :param dbname: Database name to drop
""" """
aurweb.schema.metadata.drop_all(bind=engine) # aurweb.schema.metadata.drop_all(bind=engine)
conn = engine.connect() conn = engine.connect()
conn.execute(f"DROP DATABASE {dbname}") with conn.begin():
conn.execute(text(f"DROP DATABASE {dbname}"))
conn.close() conn.close()

1
test/test_initdb.py
View file

@ -24,5 +24,6 @@ def test_run():
aurweb.initdb.run(Args()) aurweb.initdb.run(Args())
# Check that constant table rows got added via initdb. # Check that constant table rows got added via initdb.
with aurweb.db.begin():
record = aurweb.db.query(AccountType, AccountType.AccountType == "User").first() record = aurweb.db.query(AccountType, AccountType.AccountType == "User").first()
assert record is not None assert record is not None

10
test/test_voteinfo.py
View file

@ -1,5 +1,5 @@
import pytest import pytest
from sqlalchemy.exc import IntegrityError from sqlalchemy.exc import IntegrityError, SAWarning
from aurweb import db, time from aurweb import db, time
from aurweb.db import create, rollback from aurweb.db import create, rollback
@ -109,7 +109,7 @@ def test_voteinfo_null_submitter_raises(user: User):
def test_voteinfo_null_agenda_raises(user: User): def test_voteinfo_null_agenda_raises(user: User):
with pytest.raises(IntegrityError): with pytest.raises(IntegrityError), pytest.warns(SAWarning):
with db.begin(): with db.begin():
create( create(
VoteInfo, VoteInfo,
@ -123,7 +123,7 @@ def test_voteinfo_null_agenda_raises(user: User):
def test_voteinfo_null_user_raises(user: User): def test_voteinfo_null_user_raises(user: User):
with pytest.raises(IntegrityError): with pytest.raises(IntegrityError), pytest.warns(SAWarning):
with db.begin(): with db.begin():
create( create(
VoteInfo, VoteInfo,
@ -137,7 +137,7 @@ def test_voteinfo_null_user_raises(user: User):
def test_voteinfo_null_submitted_raises(user: User): def test_voteinfo_null_submitted_raises(user: User):
with pytest.raises(IntegrityError): with pytest.raises(IntegrityError), pytest.warns(SAWarning):
with db.begin(): with db.begin():
create( create(
VoteInfo, VoteInfo,
@ -151,7 +151,7 @@ def test_voteinfo_null_submitted_raises(user: User):
def test_voteinfo_null_end_raises(user: User): def test_voteinfo_null_end_raises(user: User):
with pytest.raises(IntegrityError): with pytest.raises(IntegrityError), pytest.warns(SAWarning):
with db.begin(): with db.begin():
create( create(
VoteInfo, VoteInfo,